CellProfiler enables reproducible research because a saved pipeline includes all the modules and settings. Here, we provide links to pipelines used in some published studies, as well as the version of CellProfiler used to create them. You can instead download the most current version of CellProfiler; older pipelines should automatically update to the current version when loaded.
If you used CellProfiler in a publication and would like to post your pipelines here, please contact us; we would be happy to host them. Please remember to give CellProfiler the proper citation in your paper.
Please note that each download link contains a compressed ZIP file with the following:
- The CellProfiler pipelines.
- Supplemental notes describing the pipelines.