CellProfiler 1.0 Help
Moderators: klmadden, mbray, LeeKamentsky, davidlogan, Anne Carpenter
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- CellProfiler 2.0 Beta: Windows 32-bit/64-bit installations
by mbray » Tue Apr 13, 2010 9:18 am - 0 Replies
- 982 Views
- Last post by mbray
Tue Apr 13, 2010 9:18 am
- CellProfiler 2.0 Beta: Windows 32-bit/64-bit installations
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- New CellProfiler 1.0 release, plus 2.0 beta
by mbray » Fri Apr 02, 2010 11:13 am - 0 Replies
- 965 Views
- Last post by mbray
Fri Apr 02, 2010 11:13 am
- New CellProfiler 1.0 release, plus 2.0 beta
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- New CellProfiler Release! Plus Developer Resources!
by davidlogan » Wed Jun 10, 2009 9:21 am - 3 Replies
- 1538 Views
- Last post by timsmith
Tue Jun 16, 2009 3:25 pm
- New CellProfiler Release! Plus Developer Resources!
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- Changes to Developer CellProfiler code for MATLAB R2008b
by mbray » Wed Dec 17, 2008 4:32 pm - 0 Replies
- 1917 Views
- Last post by mbray
Wed Dec 17, 2008 4:32 pm
- Changes to Developer CellProfiler code for MATLAB R2008b
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- 5811 "Bugfix" branch release
by davidlogan » Mon Nov 10, 2008 5:55 pm - 0 Replies
- 1276 Views
- Last post by davidlogan
Mon Nov 10, 2008 5:55 pm
- 5811 "Bugfix" branch release
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- New version of CellProfiler
by davidlogan » Wed Sep 24, 2008 8:51 am - 7 Replies
- 2425 Views
- Last post by tpan
Tue Oct 07, 2008 11:22 pm
- New version of CellProfiler
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- Topics
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- TrackObject Module Missing ID #'s in Output
by kryall » Thu Feb 18, 2010 4:42 pm
- 3 Replies
- 1098 Views
- Last post by mbray
Sat Feb 27, 2010 5:40 pm
- TrackObject Module Missing ID #'s in Output
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- long loading time
by michalp » Tue Feb 23, 2010 7:46 am - 1 Replies
- 780 Views
- Last post by mbray
Tue Feb 23, 2010 7:54 pm
- long loading time
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- Track Objects: merge identified objects
by Karvoi » Tue Feb 16, 2010 6:18 am - 1 Replies
- 825 Views
- Last post by mbray
Tue Feb 16, 2010 10:10 am
- Track Objects: merge identified objects
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- quantify contact between two types of cells (red and green)
by Jose » Thu Feb 11, 2010 6:54 am
- 6 Replies
- 1227 Views
- Last post by Jose
Tue Feb 16, 2010 3:11 am
- quantify contact between two types of cells (red and green)
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- Need help on ExampleYeastColonies_BT_PIPE.mat
by crisgil » Thu Dec 10, 2009 1:58 pm
- 4 Replies
- 1185 Views
- Last post by mbray
Thu Jan 28, 2010 9:16 pm
- Need help on ExampleYeastColonies_BT_PIPE.mat
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- How to segment objects in 1 colour from images
by bal » Wed Jan 27, 2010 1:05 pm - 1 Replies
- 709 Views
- Last post by mbray
Thu Jan 28, 2010 8:14 pm
- How to segment objects in 1 colour from images
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- error message
by Gozde » Wed Jan 27, 2010 2:37 pm
- 1 Replies
- 594 Views
- Last post by mbray
Thu Jan 28, 2010 8:06 pm
- error message
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- Problem accessing the object count data in CalculateMath
by derek » Tue Jan 26, 2010 1:38 pm
- 1 Replies
- 531 Views
- Last post by mbray
Thu Jan 28, 2010 5:15 pm
- Problem accessing the object count data in CalculateMath
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- Error in export data to excel
by paradise » Tue Jan 19, 2010 3:04 pm - 2 Replies
- 563 Views
- Last post by paradise
Tue Jan 19, 2010 4:01 pm
- Error in export data to excel
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- Module:MeasureImageGranularity
by ahbeck » Thu Jan 07, 2010 4:39 pm - 1 Replies
- 607 Views
- Last post by klmadden
Mon Jan 11, 2010 4:29 pm
- Module:MeasureImageGranularity
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- Cell ids in movies
by Barak » Tue Dec 08, 2009 12:27 pm - 1 Replies
- 510 Views
- Last post by mbray
Tue Dec 08, 2009 3:42 pm
- Cell ids in movies
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- How to save data and keep them for every cycle?
by LWY » Thu Nov 12, 2009 9:41 pm
- 13 Replies
- 1678 Views
- Last post by mbray
Thu Dec 03, 2009 9:45 am
- How to save data and keep them for every cycle?
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- Tube formation analysis
by Karolina » Wed Dec 02, 2009 7:31 am - 1 Replies
- 1165 Views
- Last post by davidlogan
Wed Dec 02, 2009 10:31 am
- Tube formation analysis
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- Interpreting MeasureObjectNeighbors Module output
by ahbeck » Tue Dec 01, 2009 2:56 am - 2 Replies
- 456 Views
- Last post by ahbeck
Wed Dec 02, 2009 12:41 am
- Interpreting MeasureObjectNeighbors Module output
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- Ground Truth
by afalcon » Thu Nov 19, 2009 1:33 pm - 3 Replies
- 608 Views
- Last post by davidlogan
Tue Dec 01, 2009 10:05 am
- Ground Truth
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- no sound on eg movie and question about edges
by cgenes » Wed Nov 11, 2009 11:45 am
- 4 Replies
- 642 Views
- Last post by cgenes
Mon Nov 30, 2009 9:51 am
- no sound on eg movie and question about edges
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- Measurement name too long...
by pavanmav » Fri Nov 20, 2009 12:59 pm - 1 Replies
- 358 Views
- Last post by mbray
Mon Nov 23, 2009 11:13 am
- Measurement name too long...
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- Black borders with CorrectIllumination
by dan260 » Thu Nov 12, 2009 2:08 pm
- 4 Replies
- 604 Views
- Last post by dan260
Mon Nov 16, 2009 1:48 pm
- Black borders with CorrectIllumination
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- automate CP on single computer
by kedmond » Mon Nov 16, 2009 11:24 am - 2 Replies
- 473 Views
- Last post by kedmond
Mon Nov 16, 2009 12:45 pm
- automate CP on single computer
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- Ki67 stain in cells labeled with Quantum dots
by Nicole » Tue Nov 10, 2009 9:53 am
- 4 Replies
- 832 Views
- Last post by mbray
Mon Nov 16, 2009 11:43 am
- Ki67 stain in cells labeled with Quantum dots
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- TUNEL analysis in intestinal cell culture
by Ainara » Tue Nov 10, 2009 2:45 am
- 2 Replies
- 659 Views
- Last post by Ainara
Mon Nov 16, 2009 5:56 am
- TUNEL analysis in intestinal cell culture
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- Intensity values when loading images in Cellprofiler
by mayad » Thu Oct 29, 2009 5:14 am
- 6 Replies
- 733 Views
- Last post by Barak
Sun Nov 15, 2009 10:20 am
- Intensity values when loading images in Cellprofiler
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- Identify 3 nuclei types
by mgwest » Wed Oct 28, 2009 4:47 pm
- 2 Replies
- 540 Views
- Last post by mbray
Fri Nov 13, 2009 4:17 pm
- Identify 3 nuclei types
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- How to process a lot of images...
by indrof » Thu Nov 12, 2009 1:45 pm - 0 Replies
- 469 Views
- Last post by indrof
Thu Nov 12, 2009 1:45 pm
- How to process a lot of images...
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- Cell counts - hemocytometer
by Luciana » Tue Jun 09, 2009 4:29 pm
- 4 Replies
- 1988 Views
- Last post by cgenes
Thu Nov 12, 2009 6:36 am
- Cell counts - hemocytometer
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- adipose tissue: cell surface area
by hooiveld » Thu Nov 05, 2009 2:04 pm
- 4 Replies
- 2767 Views
- Last post by mbray
Tue Nov 10, 2009 4:08 pm
- adipose tissue: cell surface area
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- Alignment of Immunofluorescent and HE histological images
by ahbeck » Thu Nov 05, 2009 8:40 pm
- 3 Replies
- 616 Views
- Last post by klmadden
Fri Nov 06, 2009 4:47 pm
- Alignment of Immunofluorescent and HE histological images
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- XY center coordinates for objects and all their neighbors
by cgardner » Wed Oct 28, 2009 12:20 pm
- 2 Replies
- 586 Views
- Last post by klmadden
Fri Nov 06, 2009 9:22 am
- XY center coordinates for objects and all their neighbors
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- .ics files
by cgenes » Thu Nov 05, 2009 12:13 pm - 1 Replies
- 358 Views
- Last post by davidlogan
Thu Nov 05, 2009 6:31 pm
- .ics files
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- CellProfiler on Linux
by mwoodbri » Thu Jun 11, 2009 10:44 am - 6 Replies
- 2775 Views
- Last post by davidlogan
Mon Nov 02, 2009 3:28 pm
- CellProfiler on Linux
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- CellProfiler and LabView
by guil74 » Thu Oct 29, 2009 1:17 pm - 0 Replies
- 431 Views
- Last post by guil74
Thu Oct 29, 2009 1:17 pm
- CellProfiler and LabView
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- Old modules that aren't exist anymore
by p-j » Fri Oct 09, 2009 6:49 am - 6 Replies
- 780 Views
- Last post by mbray
Wed Oct 21, 2009 8:41 am
- Old modules that aren't exist anymore
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- MakeProjection/SaveImages Modules Help
by hsjk1 » Mon Oct 19, 2009 12:22 pm
- 1 Replies
- 422 Views
- Last post by klmadden
Mon Oct 19, 2009 3:05 pm
- MakeProjection/SaveImages Modules Help
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- problem with nuclear feaures
by eliza » Wed Oct 14, 2009 4:11 pm
- 3 Replies
- 518 Views
- Last post by klmadden
Mon Oct 19, 2009 10:11 am
- problem with nuclear feaures
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- ApplyThreshold module
by lin » Thu Oct 15, 2009 8:45 am - 3 Replies
- 472 Views
- Last post by mbray
Fri Oct 16, 2009 4:09 pm
- ApplyThreshold module
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- Run from command line
by mayad » Wed Sep 02, 2009 6:04 am - 5 Replies
- 1493 Views
- Last post by mbray
Mon Oct 12, 2009 4:21 pm
- Run from command line
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- positive labeled cells and positive unlabelled ones
by Andreia » Tue Sep 29, 2009 12:10 pm - 3 Replies
- 773 Views
- Last post by mbray
Sat Oct 10, 2009 11:02 am
- positive labeled cells and positive unlabelled ones
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- Getting started with Developer's Version
by jlaplante » Thu Sep 24, 2009 11:28 pm - 1 Replies
- 358 Views
- Last post by klmadden
Thu Oct 08, 2009 1:03 pm
- Getting started with Developer's Version
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- MeasureImageQuality
by elo » Thu Oct 08, 2009 8:56 am - 1 Replies
- 326 Views
- Last post by klmadden
Thu Oct 08, 2009 12:44 pm
- MeasureImageQuality
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- CellProfiler for Tissue Microarray Immunohistochemistry
by amaidikio » Mon Oct 05, 2009 6:51 pm
- 1 Replies
- 524 Views
- Last post by klmadden
Tue Oct 06, 2009 8:33 am
- CellProfiler for Tissue Microarray Immunohistochemistry
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- Nuclei identification parameter help
by GeneA » Wed Sep 30, 2009 5:50 pm
- 1 Replies
- 338 Views
- Last post by mbray
Thu Oct 01, 2009 11:04 am
- Nuclei identification parameter help
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- How to compare to previous images
by Kris » Sun Sep 20, 2009 7:40 am - 2 Replies
- 426 Views
- Last post by mbray
Wed Sep 23, 2009 8:53 pm
- How to compare to previous images
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- Percentage of Positive cells for a given dye
by dentico » Tue Sep 22, 2009 5:56 am
- 2 Replies
- 613 Views
- Last post by dentico
Wed Sep 23, 2009 6:14 pm
- Percentage of Positive cells for a given dye
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- Background profile in time-lapse data
by mayad » Wed Sep 09, 2009 5:51 am
- 5 Replies
- 959 Views
- Last post by mbray
Fri Sep 18, 2009 10:59 am
- Background profile in time-lapse data
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- ApplyThreshold module
by gbass » Tue Sep 15, 2009 11:14 am - 3 Replies
- 462 Views
- Last post by mbray
Wed Sep 16, 2009 9:59 am
- ApplyThreshold module
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- Use of Define Grid
1, 2 by Kris » Tue Aug 18, 2009 7:49 pm
- 18 Replies
- 1755 Views
- Last post by Kris
Tue Sep 15, 2009 6:30 pm
- Use of Define Grid
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- smoothing methods
by gbass » Wed Sep 09, 2009 10:24 pm - 1 Replies
- 561 Views
- Last post by klmadden
Thu Sep 10, 2009 10:07 am
- smoothing methods
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- soft agar colony size
by gurpines » Wed Sep 09, 2009 6:35 am
- 3 Replies
- 1586 Views
- Last post by klmadden
Thu Sep 10, 2009 9:45 am
- soft agar colony size
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- window error
by gbass » Sun Sep 06, 2009 9:06 pm
- 2 Replies
- 404 Views
- Last post by gbass
Tue Sep 08, 2009 11:28 am
- window error
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