Documentation
The wiki orients developers to the structure of CellProfiler’s code, the details of how modules function, the proper use of settings and their display in the user interface, and how image and object measurements are processed and stored.
SVN Repositories
The CellProfiler project is hosted in a subversion repository
administered by the Broad Institute.
- CellProfiler 2.0 (Python 2.5): https://svn.broadinstitute.org/CellProfiler/trunk/CellProfiler/
- CellProfiler Analyst 2.0 (Python 2.5): https://svn.broadinstitute.org/CellProfiler/trunk/CPAnalyst/
- Deprecated versions, no longer actively developed:
- CellProfiler 1.0 (MATLAB, no longer under development): https://svn.broadinstitute.org/CellProfiler/trunk/CellProfiler_old_matlab/
- CellProfiler Analyst 1.0 (Java 1.6, no longer under development): https://svn.broadinstitute.org/CellProfiler/trunk/oldCPA/
Bugs and Feature Requests
Our bug tracking is currently not visible to users outside the Broad Institute. If you have encountered a bug, please contact us through the forum.
Mailing Lists
There are development lists for the CellProfiler (archive) and CellProfiler Analyst tools (archive). To subscribe, send mail to:
These are not high-traffic lists and are intended for discussions or questions ranging from code details to long-term plans for the projects. We hope to make the archives publicly available soon.
